Endosymbiotic Origin & Host-Microbe Interactions
Resources & Useful Links
Database
KEGG (metabolic pathways)
TAIR (Arabidopsis)
TreeGenes (tree species)
Orchidstra (Orchids, transcriptomics)
Visualisation
BioRender (scientific icons; subscribed)
Bioicons (scientific icons; free)
PhyloPic (silhouette images of organisms; free)
Friends Don't Let Friends Make Bad Graphs (general principles and tips for data visualisation)
Other Tools
Benchling (seq graphilised, primer design, alignment, etc.)
NCBI-BLAST (online blast tools)
BlastKOALA (gene annotation, KEGG pathways prediction)
KofamKOALA (similar to BlastKOALA but faster; based on KEGG orthology)
PANTHER (online GO analysis)
gVolante (online BUSCO for genome completeness; N50)
TYGS (online genome tree, N<50; dDDH; GC%)
MUSCLE (online multiple sequence alignment, seq <500 or file <1Mb)
Venn (elements interactions, N<30; Venn diagram, N<7)
Phyre2 (protein structure)
SignalP 6.0 (signal peptides)
DeepTMHMM (transmembrane protein)
IslandViewer (genomic island prediction)
Zotero (free reference organiser)
Zenodo (new platform for various types of data; DOI)